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SRX033206: Whole Exome sequencing for the 1000 Genomes Project
232 ILLUMINA (Illumina HiSeq 2000) runs: 213.3M spots, 30.7G bases, 17.5Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection
Submitted by: Broad Institute (BI)
Study: Exome sequencing of (MXL) Mexican Ancestry in Los Angeles, California HapMap population
Library:
Name: Solexa-42316
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
forward barcode77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
EXPECTED_BASECALL_TABLE: match_edge="full" max_mismatch="1" min_match="7" r (show full text...)(hide...)
match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_869" member_name="tagged_869_TCGGAATG" TCGGAATG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_109" member_name="tagged_109_ACAGGTAT" ACAGGTAT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_851" member_name="tagged_851_TCCAGCAA" TCCAGCAA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_878" member_name="tagged_878_TCTGCAAG" TCTGCAAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_352" member_name="tagged_352_CAGCAAGG" CAGCAAGG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_38" member_name="tagged_38_AAGACACT" AAGACACT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_504" member_name="tagged_504_CTACCAGG" CTACCAGG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_868" member_name="tagged_868_TCGCTAGA" TCGCTAGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_908" member_name="tagged_908_TGCTCGAC" TGCTCGAC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_78" member_name="tagged_78_AATGTTCT" AATGTTCT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_309" member_name="tagged_309_CAACTCTC" CAACTCTC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_567" member_name="tagged_567_GAAGGAAG" GAAGGAAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_880" member_name="tagged_880_TCTGGCGA" TCTGGCGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_581" member_name="tagged_581_GACCAGGA" GACCAGGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_655" member_name="tagged_655_GCCGTCGA" GCCGTCGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_117" member_name="tagged_117_ACCAACTG" ACCAACTG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_367" member_name="tagged_367_CATAGCGA" CATAGCGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_564" member_name="tagged_564_GAAGAAGT" GAAGAAGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_355" member_name="tagged_355_CAGCGGTA" CAGCGGTA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_291" member_name="tagged_291_ATTCCTCT" ATTCCTCT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_52" member_name="tagged_52_AAGGATGT" AAGGATGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_630" member_name="tagged_630_GCACATCT" GCACATCT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_357" member_name="tagged_357_CAGGAGCC" CAGGAGCC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_379" member_name="tagged_379_CCAACATT" CCAACATT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_332" member_name="tagged_332_CACATCCT" CACATCCT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_629" member_name="tagged_629_GCACACGA" GCACACGA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_3" member_name="tagged_3_AACAATGG" AACAATGG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_778" member_name="tagged_778_TAAGCACA" TAAGCACA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_542" member_name="tagged_542_CTGTAATC" CTGTAATC
5 BI attributes: (show...)(hide...)
BI GSSR Sample IDs: 65583.0, 65584.0, 65585.0, 65586.0, 65587.0, 65588.0, 65589.0, 65590.0, 65591.0, 65592.0, 65593.0, 65594.0, 65595.0, 65596.0, 65597.0, 65598.0, 65599.0, 65600.0, 65601.0, 65602.0, 65603.0, 65612.0, 65613.0, 65614.0, 65615.0, 65616.0, 65617.0, 65618.0, 65619.0
BI GSSR Sample LSIDs: broadinstitute.org:bsp.prod.sample:1D9U8, broadinstitute.org:bsp.prod.sample:1D9U9, broadinstitute.org:bsp.prod.sample:1D9UA, broadinstitute.org:bsp.prod.sample:1D9UB, broadinstitute.org:bsp.prod.sample:1D9UC, broadinstitute.org:bsp.prod.sample:1D9UD, broadinstitute.org:bsp.prod.sample:1D9UE, broadinstitute.org:bsp.prod.sample:1D9UF, broadinstitute.org:bsp.prod.sample:1D9UG, broadinstitute.org:bsp.prod.sample:1D9UH, broadinstitute.org:bsp.prod.sample:1D9UI, broadinstitute.org:bsp.prod.sample:1D9UJ, broadinstitute.org:bsp.prod.sample:1D9UK, broadinstitute.org:bsp.prod.sample:1D9UL, broadinstitute.org:bsp.prod.sample:1D9UM, broadinstitute.org:bsp.prod.sample:1D9UN, broadinstitute.org:bsp.prod.sample:1D9UO, broadinstitute.org:bsp.prod.sample:1D9UP, broadinstitute.org:bsp.prod.sample:1D9UQ, broadinstitute.org:bsp.prod.sample:1D9UR, broadinstitute.org:bsp.prod.sample:1D9US, broadinstitute.org:bsp.prod.sample:1D9V2, broadinstitute.org:bsp.prod.sample:1D9V3, broadinstitute.org:bsp.prod.sample:1D9V4, broadinstitute.org:bsp.prod.sample:1D9V5, broadinstitute.org:bsp.prod.sample:1D9V6, broadinstitute.org:bsp.prod.sample:1D9V7, broadinstitute.org:bsp.prod.sample:1D9V8, broadinstitute.org:bsp.prod.sample:1D9V9
BI Project Name: C474
BI Target Set: whole_exome_agilent_1.1_refseq_plus_3_boosters
BI Work Request ID: 23276
Runs: 232 runs, 213.3M spots, 30.7G bases, 17.5Gb
Run# of Spots# of BasesSizePublished
SRR0778961,111,405160M92.6Mb2010-12-14
SRR0778971,114,381160.5M94.2Mb2010-12-14
SRR077900974,348140.3M81.5Mb2010-12-14
SRR077901992,087142.9M83.3Mb2010-12-14
SRR077902955,457137.6M80.2Mb2010-12-14
SRR077905970,231139.7M81.3Mb2010-12-14
SRR0779061,130,424162.8M94.6Mb2010-12-14
SRR0779081,073,261154.5M90.5Mb2010-12-14
SRR077909927,477133.6M78.4Mb2010-12-14
SRR077910861,317124M72.1Mb2010-12-14
SRR077916874,879126M73.1Mb2010-12-14
SRR0779171,090,641157.1M91.8Mb2010-12-14
SRR077918879,045126.6M72.9Mb2010-12-14
SRR077920843,356121.4M70.2Mb2010-12-14
SRR077921855,014123.1M71.6Mb2010-12-14
There are 217 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS003636 : tagged_332_CACATCCT7.9M1.1G
2SRS003638 : tagged_309_CAACTCTC8.8M1.3G
3SRS003639 : tagged_504_CTACCAGG7.4M1.1G
4SRS003641 : tagged_542_CTGTAATC7.7M1.1G
5SRS003642 : tagged_869_TCGGAATG7.3M1G
6SRS003644 : tagged_778_TAAGCACA7.5M1.1G
7SRS003645 : tagged_38_AAGACACT7.1M1G
8SRS003647 : tagged_3_AACAATGG6.8M986.3M
9SRS003648 : tagged_352_CAGCAAGG7M1G
10SRS003650 : tagged_291_ATTCCTCT7.6M1.1G
11SRS003651 : tagged_564_GAAGAAGT7.1M1G
12SRS003653 : tagged_567_GAAGGAAG6.3M901.8M
13SRS003654 : tagged_851_TCCAGCAA6.8M975.7M
14SRS003656 : tagged_868_TCGCTAGA6.9M987.9M
15SRS003657 : tagged_52_AAGGATGT6.9M996.2M
16SRS003659 : tagged_78_AATGTTCT7.5M1.1G
17SRS003660 : tagged_357_CAGGAGCC7.8M1.1G
18SRS003662 : tagged_355_CAGCGGTA7.6M1.1G
19SRS003663 : tagged_629_GCACACGA9M1.3G
20SRS003665 : tagged_581_GACCAGGA7M1G
21SRS003666 : tagged_880_TCTGGCGA7M1G
22SRS003680 : tagged_878_TCTGCAAG6.9M996.7M
23SRS003681 : tagged_117_ACCAACTG7.2M1G
24SRS003683 : tagged_109_ACAGGTAT7.1M1G
25SRS003684 : tagged_367_CATAGCGA7.8M1.1G
26SRS003686 : tagged_379_CCAACATT7.7M1.1G
27SRS003687 : tagged_630_GCACATCT7.3M1.1G
28SRS003689 : tagged_655_GCCGTCGA6.9M995.3M
29SRS003690 : tagged_908_TGCTCGAC7.4M1.1G
30 : defaultn/an/a

ID:
40150

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